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» Reconstructing the Topology of Protein Complexes
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EVOW
2009
Springer
14 years 2 months ago
A Memetic Algorithm for Phylogenetic Reconstruction with Maximum Parsimony
The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA, RNA or protein sequences while minimizing the number of evolutionary changes. Much work has been ...
Jean-Michel Richer, Adrien Goëffon, Jin-Kao H...
RECOMB
2012
Springer
11 years 10 months ago
Reconstructing Boolean Models of Signaling
Abstract. Since the first emergence of protein-protein interaction networks, more than a decade ago, they have been viewed as static scaffolds of the signaling-regulatory events ...
Roded Sharan, Richard M. Karp
BMCBI
2006
76views more  BMCBI 2006»
13 years 7 months ago
Coloring the Mu transpososome
Background: Tangle analysis has been applied successfully to study proteins which bind two segments of DNA and can knot and link circular DNA. We show how tangle analysis can be e...
Isabel K. Darcy, Jeff Chang, Nathan Druivenga, Col...
BMCBI
2006
108views more  BMCBI 2006»
13 years 7 months ago
SPIDer: Saccharomyces protein-protein interaction database
Background: Since proteins perform their functions by interacting with one another and with other biomolecules, reconstructing a map of the protein-protein interactions of a cell,...
Xiaomei Wu, Lei Zhu, Jie Guo, Cong Fu, Hongjun Zho...
COMPGEOM
2008
ACM
13 years 9 months ago
Towards persistence-based reconstruction in euclidean spaces
Manifold reconstruction has been extensively studied for the last decade or so, especially in two and three dimensions. Recent advances in higher dimensions have led to new method...
Frédéric Chazal, Steve Oudot