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» Reconstruction of Reticulate Networks from Gene Trees
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BMCBI
2006
127views more  BMCBI 2006»
13 years 7 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
BMCBI
2008
129views more  BMCBI 2008»
13 years 7 months ago
Motif-directed network component analysis for regulatory network inference
Background: Network Component Analysis (NCA) has shown its effectiveness in discovering regulators and inferring transcription factor activities (TFAs) when both microarray data a...
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wan...
IPPS
2009
IEEE
14 years 2 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
CEC
2007
IEEE
13 years 11 months ago
Evolving hypernetwork classifiers for microRNA expression profile analysis
Abstract-- High-throughput microarrays inform us on different outlooks of the molecular mechanisms underlying the function of cells and organisms. While computational analysis for ...
Sun Kim, Soo-Jin Kim, Byoung-Tak Zhang
IMC
2005
ACM
14 years 1 months ago
Exploiting Underlying Structure for Detailed Reconstruction of an Internet-scale Event
Network “telescopes” that record packets sent to unused blocks of Internet address space have emerged as an important tool for observing Internet-scale events such as the spre...
Abhishek Kumar, Vern Paxson, Nicholas Weaver