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» Reconstruction of Reticulate Networks from Gene Trees
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WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
14 years 1 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
BMCBI
2010
143views more  BMCBI 2010»
13 years 7 months ago
Learning gene regulatory networks from only positive and unlabeled data
Background: Recently, supervised learning methods have been exploited to reconstruct gene regulatory networks from gene expression data. The reconstruction of a network is modeled...
Luigi Cerulo, Charles Elkan, Michele Ceccarelli
GCB
2009
Springer
196views Biometrics» more  GCB 2009»
13 years 5 months ago
Comparative Generalized Logic Modeling Reveals Differential Gene Interactions during Cell Cycle Exit in Drosophila Wing Developm
Abstract: A comparative interaction detection paradigm is proposed to study the complex gene regulatory networks that control cell proliferation during development. Instead of atte...
Mingzhou Song, Chung-Chien Hong, Yang Zhang, Laura...
COCOON
2005
Springer
14 years 1 months ago
RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer
Horizontal gene transfer (HGT) plays a major role in microbial genome diversification, and is claimed to be rampant among various groups of genes in bacteria. Further, HGT is a ma...
Luay Nakhleh, Derek A. Ruths, Li-San Wang
BIOCOMP
2009
13 years 8 months ago
Inferring Gene Regulatory Networks from Asynchronous Microarray Data
Modern approaches to treating genetic disorders, cancers and even epidemics rely on a detailed understanding of the underlying gene signaling network. Previous work has used time s...
David Oviatt, Mark J. Clement, Quinn Snell, Kennet...