Background: Baum-Welch training is an expectation-maximisation algorithm for training the emission and transition probabilities of hidden Markov models in a fully automated way. I...
This paper proposes a set of affine invariant features (AIFs) for sequence data. The proposed AIFs can be calculated directly from the sequence data, and their invariance to af...
Background: In plant mitochondria, the post-transcriptional RNA editing process converts C to U at a number of specific sites of the mRNA sequence and usually restores phylogeneti...
Transformations using retiming and resynthesis operations are the most important and practical (if not the only) techniques used in optimizing synchronous hardware systems. Althoug...
Background: Recent technological advancements have made high throughput sequencing an increasingly popular approach for transcriptome analysis. Advantages of sequencing-based tran...
Zhijin Wu, Bethany D. Jenkins, Tatiana A. Rynearso...