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» Region-based Annotation Tool using Partition Trees
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UAI
2004
13 years 8 months ago
From Fields to Trees
We present new MCMC algorithms for computing the posterior distributions and expectations of the unknown variables in undirected graphical models with regular structure. For demon...
Firas Hamze, Nando de Freitas
BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
BMCBI
2008
114views more  BMCBI 2008»
13 years 7 months ago
Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale represen
Background: With the amount of influenza genome sequence data growing rapidly, researchers need machine assistance in selecting datasets and exploring the data. Enhanced visualiza...
Leonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova
CLIN
2001
13 years 8 months ago
The Alpino Dependency Treebank
In this paper we present the Alpino Dependency Treebank and the tools that we have developed to facilitate the annotation process. Annotation typically starts with parsing a sente...
Leonoor van der Beek, Gosse Bouma, Rob Malouf, Ger...
BMCBI
2010
208views more  BMCBI 2010»
13 years 7 months ago
Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene
Background: Image analysis is an essential component in many biological experiments that study gene expression, cell cycle progression, and protein localization. A protocol for tr...
Zafer Aydin, John I. Murray, Robert H. Waterston, ...