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» Regular Expression Matching with Multi-Strings
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LPAR
2005
Springer
14 years 2 months ago
Matching with Regular Constraints
We describe a sound, terminating, and complete matching algorithm for terms built over flexible arity function symbols and context, function, sequence, and individual variables. C...
Temur Kutsia, Mircea Marin
EVOW
2004
Springer
14 years 11 days ago
Evolving Regular Expression-Based Sequence Classifiers for Protein Nuclear Localisation
A number of bioinformatics tools use regular expression (RE) matching to locate protein or DNA sequence motifs that have been discovered by researchers in the laboratory. For exam...
Amine Heddad, Markus Brameier, Robert M. MacCallum
CSR
2006
Springer
14 years 9 days ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
ANCS
2007
ACM
14 years 19 days ago
Compiling PCRE to FPGA for accelerating SNORT IDS
Deep Payload Inspection systems like SNORT and BRO utilize regular expression for their rules due to their high expressibility and compactness. The SNORT IDS system uses the PCRE ...
Abhishek Mitra, Walid A. Najjar, Laxmi N. Bhuyan
ANCS
2007
ACM
14 years 19 days ago
An improved algorithm to accelerate regular expression evaluation
Modern network intrusion detection systems need to perform regular expression matching at line rate in order to detect the occurrence of critical patterns in packet payloads. Whil...
Michela Becchi, Patrick Crowley