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ICS
2010
Tsinghua U.
14 years 9 days ago
Small-ruleset regular expression matching on GPGPUs: quantitative performance analysis and optimization
We explore the intersection between an emerging class of architectures and a prominent workload: GPGPUs (General-Purpose Graphics Processing Units) and regular expression matching...
Jamin Naghmouchi, Daniele Paolo Scarpazza, Mladen ...
EVOW
2004
Springer
13 years 11 months ago
Evolving Regular Expression-Based Sequence Classifiers for Protein Nuclear Localisation
A number of bioinformatics tools use regular expression (RE) matching to locate protein or DNA sequence motifs that have been discovered by researchers in the laboratory. For exam...
Amine Heddad, Markus Brameier, Robert M. MacCallum
GECCO
2009
Springer
173views Optimization» more  GECCO 2009»
14 years 2 months ago
Creating regular expressions as mRNA motifs with GP to predict human exon splitting
Low correlation between mRNA concentrations measured at different locations for the same exon show many current Ensembl exon definitions are incomplete. Automatically created pa...
William B. Langdon, Joanna Rowsell, Andrew P. Harr...
SODA
2010
ACM
213views Algorithms» more  SODA 2010»
14 years 4 months ago
Regular Expression Matching with Multi-Strings
Regular expression matching is a key task (and often computational bottleneck) in a variety of software tools and applications. For instance, the standard grep and sed utilities, ...
Philip Bille, Mikkel Thorup
ANCS
2007
ACM
13 years 11 months ago
An improved algorithm to accelerate regular expression evaluation
Modern network intrusion detection systems need to perform regular expression matching at line rate in order to detect the occurrence of critical patterns in packet payloads. Whil...
Michela Becchi, Patrick Crowley