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» Relating taxonomies with regulations
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RECOMB
2005
Springer
14 years 7 months ago
Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes
Background: Correlations between polymorphic markers and observed phenotypes provide the basis for mapping traits in quantitative genetics. When the phenotype is gene expression, ...
David Kulp, Manjunatha Jagalur
BIBE
2006
IEEE
139views Bioinformatics» more  BIBE 2006»
14 years 1 months ago
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data
Microarray experiments produce gene expression data at such a high speed and volume that it is imperative to use highly specialized computational tools for their analyses. One grou...
Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Kr...
ACL
2009
13 years 5 months ago
A Metric-based Framework for Automatic Taxonomy Induction
This paper presents a novel metric-based framework for the task of automatic taxonomy induction. The framework incrementally clusters terms based on ontology metric, a score indic...
Hui Yang, Jamie Callan
DGO
2003
107views Education» more  DGO 2003»
13 years 9 months ago
Regulatory Information Management and Compliance Assistance
ct The REGNET Project aims to develop a formal information infrastructure for regulatory information management and compliance assistance. This paper discusses three components of ...
Shawn Kerrigan, Charles Heenan, Haoyi Wang, Kincho...
BMCBI
2008
90views more  BMCBI 2008»
13 years 7 months ago
Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation
Background: The rate of mRNA transcription is controlled by transcription factors that bind to specific DNA motifs in promoter regions upstream of protein coding genes. Recent res...
Jakub Orzechowski Westholm, Feifei Xu, Hans Ronne,...