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ALMOB
2007
74views more  ALMOB 2007»
13 years 9 months ago
Evaluating deterministic motif significance measures in protein databases
Background: Assessing the outcome of motif mining algorithms is an essential task, as the number of reported motifs can be very large. Significance measures play a central role in...
Pedro Gabriel Ferreira, Paulo J. Azevedo
BMCBI
2006
195views more  BMCBI 2006»
13 years 9 months ago
Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities
Background: Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the instance...
Paul Shafer, Timothy Isganitis, Golan Yona
ICDE
2007
IEEE
124views Database» more  ICDE 2007»
14 years 10 months ago
Topology Search over Biological Databases
We introduce the notion of a data topology and the problem of topology search over databases. A data topology summarizes the set of all possible relationships that connect a given...
Lin Guo, Jayavel Shanmugasundaram, Golan Yona
ACSD
2006
IEEE
80views Hardware» more  ACSD 2006»
14 years 3 months ago
Schedulability Analysis of Petri Nets Based on Structural Properties
A schedule of a Petri Net (PN) represents a set of firing sequences that can be infinitely repeated within a bounded state space, regardless of the outcomes of the nondeterminis...
Cong Liu, Alex Kondratyev, Yosinori Watanabe, Albe...
VLDB
1999
ACM
127views Database» more  VLDB 1999»
14 years 1 months ago
Evaluating Top-k Selection Queries
In many applications, users specify target values for certain attributes, without requiring exact matches to these values in return. Instead, the result to such queries is typical...
Surajit Chaudhuri, Luis Gravano