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BMCBI
2005
106views more  BMCBI 2005»
13 years 9 months ago
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution
Background: General protein evolution models help determine the baseline expectations for the evolution of sequences, and they have been extensively useful in sequence analysis an...
Andy Pang, Andrew D. Smith, Paulo A. S. Nuin, Elis...
JAT
2007
55views more  JAT 2007»
13 years 9 months ago
The Homogeneous Approximation Property for wavelet frames
An irregular wavelet frame has the form W(ψ, Λ) = {a−1/2 ψ(x a − b)}(a,b)∈Λ, where ψ ∈ L2 (R) and Λ is an arbitrary sequence of points in the affine group A = R+ × ...
Christopher Heil, Gitta Kutyniok
BMCBI
2005
131views more  BMCBI 2005»
13 years 9 months ago
Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases
Background: Complex biological database systems have become key computational tools used daily by scientists and researchers. Many of these systems must be capable of executing on...
Marko Srdanovic, Ulf Schenk, Michael Schwieger, Fa...
BMCBI
2005
97views more  BMCBI 2005»
13 years 9 months ago
Comparative mapping of sequence-based and structure-based protein domains
Background: Protein domains have long been an ill-defined concept in biology. They are generally described as autonomous folding units with evolutionary and functional independenc...
Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, S...
BMCBI
2005
77views more  BMCBI 2005»
13 years 9 months ago
Structural comparison of metabolic networks in selected single cell organisms
Background: There has been tremendous interest in the study of biological network structure. An array of measurements has been conceived to assess the topological properties of th...
Dongxiao Zhu, Zhaohui S. Qin