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» Remote homology detection based on oligomer distances
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BIOINFORMATICS
2006
63views more  BIOINFORMATICS 2006»
13 years 11 months ago
Remote homology detection based on oligomer distances
Thomas Lingner, Peter Meinicke
BIOCOMP
2009
14 years 5 hour ago
Improving Remote Homology Detection Using Sequence Properties and Position Specific Scoring Matrices
Current biological sequence comparison tools frequently fail to recognize matches between homologs when sequence similarity is below the twilight zone of less than 25% sequence id...
Gina Cooper, Michael L. Raymer
BMCBI
2008
178views more  BMCBI 2008»
13 years 11 months ago
A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic ana
Background: Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods based on support vector machine (SVM) ...
Bin Liu, Xiaolong Wang, Lei Lin, Qiwen Dong, Xuan ...
BMCBI
2008
164views more  BMCBI 2008»
13 years 11 months ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
13 years 10 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis