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BMCBI
2004
174views more  BMCBI 2004»
13 years 10 months ago
Implications for domain fusion protein-protein interactions based on structural information
Background: Several in silico methods exist that were developed to predict protein interactions from the copious amount of genomic and proteomic data. One of these methods is Doma...
Jer-Ming Chia, Prasanna R. Kolatkar
ALMOB
2008
95views more  ALMOB 2008»
13 years 10 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen
BMCBI
2008
121views more  BMCBI 2008»
13 years 10 months ago
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology
Background: Ontologies such as the Gene Ontology can enable the construction of complex queries over biological information in a conceptual way, however existing systems to do thi...
Kieran O'Neill, Alexander García Castro, An...
BMCBI
2010
232views more  BMCBI 2010»
13 years 10 months ago
LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB
Background: Biochemical networks play an essential role in systems biology. Rapidly growing network data and e research activities call for convenient visualization tools to aid i...
Sheng He, Juan Mei, Guiyang Shi, Zhengxiang Wang, ...
JMLR
2010
144views more  JMLR 2010»
13 years 5 months ago
Maximum Margin Learning with Incomplete Data: Learning Networks instead of Tables
In this paper we address the problem of predicting when the available data is incomplete. We show that changing the generally accepted table-wise view of the sample items into a g...
Sándor Szedmák, Yizhao Ni, Steve R. ...