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WOB
2004
120views Bioinformatics» more  WOB 2004»
13 years 8 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
TASLP
2008
84views more  TASLP 2008»
13 years 7 months ago
Searching Musical Audio Using Symbolic Queries
Finding a piece of music based on its content is a key problem in music information retrieval. For example, a user may be interested in finding music based on knowledge of only a s...
Iman S. H. Suyoto, Alexandra L. Uitdenbogerd, Falk...
KDD
2003
ACM
113views Data Mining» more  KDD 2003»
14 years 7 months ago
Indexing multi-dimensional time-series with support for multiple distance measures
Although most time-series data mining research has concentrated on providing solutions for a single distance function, in this work we motivate the need for a single index structu...
Michail Vlachos, Marios Hadjieleftheriou, Dimitrio...
CPM
2006
Springer
145views Combinatorics» more  CPM 2006»
13 years 11 months ago
Approximation of RNA Multiple Structural Alignment
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
Marcin Kubica, Romeo Rizzi, Stéphane Vialet...
PR
2011
13 years 2 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...