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» Representations of Metabolic Knowledge: Pathways
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LREC
2008
66views Education» more  LREC 2008»
13 years 8 months ago
Connecting Text Mining and Pathways using the PathText Resource
Many systems have been developed in the past few years to assist researchers in the discovery of knowledge published as English text, for example in the PubMed database. At the sa...
Rune Sætre, Brian Kemper, Kanae Oda, Naoaki ...
BMCBI
2006
172views more  BMCBI 2006»
13 years 6 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
BMCBI
2010
154views more  BMCBI 2010»
13 years 4 months ago
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
Background: External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gen...
Andreas Kowarsch, Florian Blöchl, Sebastian B...
IEAAIE
2004
Springer
14 years 2 days ago
Cell Modeling Using Agent-Based Formalisms
The systems biology community is building increasingly complex models and simulations of cells and other biological entities. This community is beginning to look at alternatives t...
Ken Webb, Tony White
ECAI
2004
Springer
14 years 3 days ago
Towards a Logical Analysis of Biochemical Reactions
We provide a logical model of biochemical reactions and show how hypothesis generation using weakest sufficient and strongest necessary conditions may be used to provide addition...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...