In this paper, we propose an automatic and autonomous methodology to discover taxonomies of terms from the Web and represent retrieved web documents into a meaningful organization....
Abstract. In this work, a Simulated Annealing (SA) algorithm is proposed for a Metabolic Engineering task: the optimization of the set of gene deletions to apply to a microbial str...
We provide a logical model of biochemical reactions and show how hypothesis generation using weakest sufficient and strongest necessary conditions may be used to provide addition...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...
Cross-reactions and other systematic difficulties generated by the coupling of functional chemical subsystems pose the largest challenge for assembling a viable protocell in the la...
Harold Fellermann, Steen Rasmussen, Hans-Joachim Z...
Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we investigate a new problem ...
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschü...