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» Representations of Metabolic Knowledge
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AIME
2005
Springer
14 years 3 months ago
Web Mining Techniques for Automatic Discovery of Medical Knowledge
In this paper, we propose an automatic and autonomous methodology to discover taxonomies of terms from the Web and represent retrieved web documents into a meaningful organization....
David Sánchez, Antonio Moreno
EPIA
2007
Springer
14 years 4 months ago
Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains
Abstract. In this work, a Simulated Annealing (SA) algorithm is proposed for a Metabolic Engineering task: the optimization of the set of gene deletions to apply to a microbial str...
Miguel Rocha, Rui Mendes, Paulo Maia, José ...
ECAI
2004
Springer
14 years 3 months ago
Towards a Logical Analysis of Biochemical Reactions
We provide a logical model of biochemical reactions and show how hypothesis generation using weakest sufficient and strongest necessary conditions may be used to provide addition...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...
ALIFE
2007
13 years 10 months ago
Life Cycle of a Minimal Protocell - A Dissipative Particle Dynamics Study
Cross-reactions and other systematic difficulties generated by the coupling of functional chemical subsystems pose the largest challenge for assembling a viable protocell in the la...
Harold Fellermann, Steen Rasmussen, Hans-Joachim Z...
JIB
2008
87views more  JIB 2008»
13 years 10 months ago
2.5D Visualisation of Overlapping Biological Networks
Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we investigate a new problem ...
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschü...