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    JCB
    2006
    185views more  JCB 2006»
    A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
    13 years 7 months ago
    A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
    Download  www.math.tau.ac.il
    Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...
    Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
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    JELIA
    2004
    Springer
    133views Artificial Intelligence» more  JELIA 2004»
    Towards a Logical Analysis of Biochemical Pathways
    14 years 22 days ago
    Towards a Logical Analysis of Biochemical Pathways
    Download  www.ida.liu.se
    Biochemical pathways or networks are generic representations used to model many different types of complex functional and physical interactions in biological systems. Models based ...
    Patrick Doherty, Steve Kertes, Martin Magnusson, A...
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    BMCBI
    2010
    167views more  BMCBI 2010»
    Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of met
    13 years 7 months ago
    Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of met
    Download  www.biomedcentral.com
    Background: Currently, a number of bioinformatics methods are available to generate appropriate lists of genes from a microarray experiment. While these lists represent an accurat...
    Melissa J. Morine, Jolene McMonagle, Sinead Toomey...
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    BIOCOMP
    2006
    233views Bioinformatics» more  BIOCOMP 2006»
    Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
    13 years 8 months ago
    Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
    Download  ww1.ucmss.com
    Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
    Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
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    BMCBI
    2006
    129views more  BMCBI 2006»
    Functional clustering of yeast proteins from the protein-protein interaction network
    13 years 7 months ago
    Functional clustering of yeast proteins from the protein-protein interaction network
    Download  www.biomedcentral.com
    Background: The abundant data available for protein interaction networks have not yet been fully understood. New types of analyses are needed to reveal organizational principles o...
    Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jerni...
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