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» Representing Trees with Constraints
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POPL
2002
ACM
14 years 9 months ago
The first-order theory of subtyping constraints
We investigate the first-order theory of subtyping constraints. We show that the first-order theory of nonstructural subtyping is undecidable, and we show that in the case where a...
Zhendong Su, Alexander Aiken, Joachim Niehren, Tim...
GCB
1997
Springer
74views Biometrics» more  GCB 1997»
14 years 1 months ago
Using constraint programming for lattice protein folding
We present a global search technique for nding the global minimal conformation of a sequence in Dill's HP-lattice model5;6 . The HP-lattice model is a simpli ed model of prot...
Rolf Backofen
CORR
2004
Springer
177views Education» more  CORR 2004»
13 years 8 months ago
Typestate Checking and Regular Graph Constraints
We introduce regular graph constraints and explore their decidability properties. The motivation for regular graph constraints is 1) type checking of changing types of objects in ...
Viktor Kuncak, Martin C. Rinard
ICML
2004
IEEE
14 years 9 months ago
Training conditional random fields via gradient tree boosting
Conditional Random Fields (CRFs; Lafferty, McCallum, & Pereira, 2001) provide a flexible and powerful model for learning to assign labels to elements of sequences in such appl...
Thomas G. Dietterich, Adam Ashenfelter, Yaroslav B...
WABI
2004
Springer
109views Bioinformatics» more  WABI 2004»
14 years 2 months ago
Online Consensus and Agreement of Phylogenetic Trees
Computational heuristics are the primary methods for reconstruction of phylogenetic trees on large datasets. Most large-scale phylogenetic analyses produce numerous trees that are ...
Tanya Y. Berger-Wolf