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BMCBI
2010
172views more  BMCBI 2010»
15 years 4 months ago
Accessing the SEED genome databases via Web services API: tools for programmers
Background: The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems ...
Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Ol...
BMCBI
2008
121views more  BMCBI 2008»
15 years 4 months ago
iRefIndex: A consolidated protein interaction database with provenance
Background: Interaction data for a given protein may be spread across multiple databases. We set out to create a unifying index that would facilitate searching for these data and ...
Sabry Razick, George Magklaras, Ian M. Donaldson
BMCBI
2008
128views more  BMCBI 2008»
15 years 4 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
BMCBI
2010
189views more  BMCBI 2010»
15 years 2 months ago
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database
Background: A common approach to understanding the genetic basis of complex traits is through identification of associated quantitative trait loci (QTL). Fine mapping QTLs require...
Isaak Y. Tecle, Naama Menda, Robert M. Buels, Esth...
DEBU
2010
128views more  DEBU 2010»
15 years 1 months ago
Designing Database Operators for Flash-enabled Memory Hierarchies
Flash memory affects not only storage options but also query processing. In this paper, we analyze the use of flash memory for database query processing, including algorithms that...
Goetz Graefe, Stavros Harizopoulos, Harumi A. Kuno...