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AIS
2004
Springer
14 years 1 months ago
Continuity and Change (Activity) Are Fundamentally Related in DEVS Simulation of Continuous Systems
Abstract. The success of DEVS methods for simulating large continuous models calls for more in-depth examination of the applicability of discrete events in modeling continuous phen...
Bernard P. Zeigler, Rajanikanth Jammalamadaka, Sal...
ICPPW
2009
IEEE
13 years 5 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
SC
2009
ACM
14 years 2 months ago
FPGA-based acceleration of CHARMM-potential minimization
Energy minimization is an important step in molecular modeling, with applications in molecular docking and in mapping binding sites. Minimization involves repeated evaluation of v...
Bharat Sukhwani, Martin C. Herbordt
IDMS
2000
Springer
131views Multimedia» more  IDMS 2000»
13 years 11 months ago
Spatially Aware Local Communication in the RAUM System
In this paper, we propose a new paradigm for local communication between devices in Ubiquitous Computing environments, assuming a multitude of computerized everyday appliances comm...
Felix Hupfeld, Michael Beigl
BMCBI
2011
13 years 2 months ago
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
Background: Molecular database search tools need statistical models to assess the significance for the resulting hits. In the classical approach one asks the question how probable...
Stefan Wolfsheimer, Inke Herms, Sven Rahmann, Alex...