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BMCBI
2006
98views more  BMCBI 2006»
13 years 9 months ago
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements
Background: Many DNA regulatory elements occur as multiple instances within a target promoter. Gibbs sampling programs for finding DNA regulatory elements de novo can be prohibiti...
Kannan Tharakaraman, Leonardo Mariño-Ram&ia...
JMLR
2006
389views more  JMLR 2006»
13 years 8 months ago
A Very Fast Learning Method for Neural Networks Based on Sensitivity Analysis
This paper introduces a learning method for two-layer feedforward neural networks based on sensitivity analysis, which uses a linear training algorithm for each of the two layers....
Enrique Castillo, Bertha Guijarro-Berdiñas,...
NAR
2008
91views more  NAR 2008»
13 years 8 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
BMCBI
2005
137views more  BMCBI 2005»
13 years 8 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
CCR
2004
116views more  CCR 2004»
13 years 8 months ago
An empirical study of "bogon" route advertisements
An important factor in the robustness of the interdomain routing system is whether the routers in autonomous systems (ASes) filter routes for "bogon" address space--i.e....
Nick Feamster, Jaeyeon Jung, Hari Balakrishnan