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» Rounding to an Integral Program
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BMCBI
2010
135views more  BMCBI 2010»
13 years 10 months ago
Lists2Networks: Integrated analysis of gene/protein lists
Background: Systems biologists are faced with the difficultly of analyzing results from large-scale studies that profile the activity of many genes, RNAs and proteins, applied in ...
Alexander Lachmann, Avi Ma'ayan
BMCBI
2010
153views more  BMCBI 2010»
13 years 9 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
BMCBI
2010
193views more  BMCBI 2010»
13 years 5 months ago
Mayday - integrative analytics for expression data
Background: DNA Microarrays have become the standard method for large scale analyses of gene expression and epigenomics. The increasing complexity and inherent noisiness of the ge...
Florian Battke, Stephan Symons, Kay Nieselt
BMCBI
2011
13 years 5 months ago
iPhy: an integrated phylogenetic workbench for supermatrix analyses
Background: The increasing availability of molecular sequence data means that the accuracy of future phylogenetic studies is likely to by limited by systematic bias and taxon choi...
Martin O. Jones, Georgios D. Koutsovoulos, Mark L....
AGTIVE
2003
Springer
14 years 3 months ago
Integrating Graph Rewriting and Standard Software Tools
OptimixJ is a graph rewrite tool that can be embedded easily into the standard software process. Applications and models can be developed in Java or UML and extended by graph rewri...
Uwe Aßmann, Johan Lövdahl