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CONCUR
2007
Springer
14 years 4 months ago
Rule-Based Modelling of Cellular Signalling
Abstract. Modelling is becoming a necessity in studying biological signalling pathways, because the combinatorial complexity of such systems rapidly overwhelms intuitive and qualit...
Vincent Danos, Jérôme Feret, Walter F...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
WOA
2001
13 years 11 months ago
A Knowledge Modeling Tool for Rule-Based Agents
Different approaches to improve business process have been proposed. One of the most common techniques is based on software agents and workflow technology. A software agent can be...
Marco Repetto, Christian Vecchiola, Antonio Boccal...
FMSB
2008
129views Formal Methods» more  FMSB 2008»
13 years 11 months ago
Rule-Based Modelling, Symmetries, Refinements
Rule-based modelling is particularly effective for handling the highly combinatorial aspects of cellular signalling. The dynamics is described in terms of interactions between part...
Vincent Danos, Jérôme Feret, Walter F...
SMI
2010
IEEE
165views Image Analysis» more  SMI 2010»
13 years 7 months ago
Designing a Topological Modeler Kernel: A Rule-Based Approach
In this article, we present a rule-based language dedicated to topological operations, based on graph transformations. Generalized maps are described as a particular class of graph...
Thomas Bellet, Mathieu Poudret, Agnès Arnou...