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» Run-Time Methods for Parallelizing Partially Parallel Loops
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BMCBI
2010
109views more  BMCBI 2010»
13 years 7 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
SIMPRA
2011
13 years 2 months ago
A real-time multigrid finite hexahedra method for elasticity simulation using CUDA
In this paper we present a GPU-based multigrid approach for simulating elastic deformable objects in real time. Our method is based on a finite element discretization of the defo...
Christian Dick, Joachim Georgii, Rüdiger West...
ICDM
2008
IEEE
117views Data Mining» more  ICDM 2008»
14 years 2 months ago
Improving Collaborative Filtering Recommendations Using External Data
This paper describes an approach for incorporating externally specified aggregate ratings information into certain types of collaborative filtering (CF) methods. For a statistic...
Akhmed Umyarov, Alexander Tuzhilin
HPCC
2005
Springer
14 years 1 months ago
Efficient SIMD Numerical Interpolation
This paper reports the results of SIMD implementation of a number of interpolation algorithms on common personal computers. These methods fit a curve on some given input points for...
Hossein Ahmadi, Maryam Moslemi Naeini, Hamid Sarba...
IPPS
2003
IEEE
14 years 25 days ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002