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ICDE
2010
IEEE
199views Database» more  ICDE 2010»
14 years 2 months ago
Mining mutation chains in biological sequences
— The increasing infectious disease outbreaks has led to a need for new research to better understand the disease’s origins, epidemiological features and pathogenicity caused b...
Chang Sheng, Wynne Hsu, Mong-Li Lee, Joo Chuan Ton...
IPPS
2007
IEEE
14 years 1 months ago
Experiments with a Software Component Enabling NetSolve with Direct Communications in a Non-Intrusive and Incremental Way
The paper presents a software component that enables NetSolve with direct communications between servers in a non-intrusive and incremental way. Non-intrusiveness means that the s...
Xin Zuo, Alexey L. Lastovetsky
IEEECGIV
2006
IEEE
14 years 1 months ago
PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database
PathBank is a web-based query and visualization system for biological pathways using an integrated pathway database. To address the needs for biologists to visualize and analyze b...
Joshua Wing Kei Ho, Tristan Manwaring, Seok-Hee Ho...
ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
14 years 1 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
SC
2005
ACM
14 years 1 months ago
ClawHMMER: A Streaming HMMer-Search Implementation
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
Daniel Reiter Horn, Mike Houston, Pat Hanrahan