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» SIMAP - structuring the network of protein similarities
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BMCBI
2010
103views more  BMCBI 2010»
13 years 7 months ago
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information
Background: Guanosine triphosphate (GTP)-binding proteins play an important role in regulation of G-protein. Thus prediction of GTP interacting residues in a protein is one of the...
Jagat S. Chauhan, Nitish K. Mishra, Gajendra P. S....
BIBM
2008
IEEE
175views Bioinformatics» more  BIBM 2008»
14 years 1 months ago
Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data Sources
We propose a novel approach for predicting protein functions of an organism by coupling sequence homology and PPI data between two (or more) species with multifunctional Gene Onto...
Antonina Mitrofanova, Vladimir Pavlovic, Bud Mishr...
BMCBI
2008
141views more  BMCBI 2008»
13 years 7 months ago
Functional discrimination of membrane proteins using machine learning techniques
Background: Discriminating membrane proteins based on their functions is an important task in genome annotation. In this work, we have analyzed the characteristic features of amin...
M. Michael Gromiha, Yukimitsu Yabuki
BMCBI
2006
114views more  BMCBI 2006»
13 years 7 months ago
A direct comparison of protein interaction confidence assignment schemes
Background: Recent technological advances have enabled high-throughput measurements of protein-protein interactions in the cell, producing large protein interaction networks for v...
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded S...
ICASSP
2011
IEEE
12 years 11 months ago
Fast network querying algorithm for searching large-scale biological networks
Network querying aims to search a large network for subnetwork regions that are similar to a given query network. In this paper, we propose a novel algorithm for querying large sc...
Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon