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IPPS
2006
IEEE
14 years 22 days ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
BMCBI
2006
101views more  BMCBI 2006»
13 years 6 months ago
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms
Background: The development of algorithms to infer the structure of gene regulatory networks based on expression data is an important subject in bioinformatics research. Validatio...
Tim Van den Bulcke, Koen Van Leemput, Bart Naudts,...
SC
2005
ACM
14 years 8 days ago
ClawHMMER: A Streaming HMMer-Search Implementation
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
Daniel Reiter Horn, Mike Houston, Pat Hanrahan
TVCG
2008
119views more  TVCG 2008»
13 years 6 months ago
Exploration of Networks using overview+detail with Constraint-based cooperative layout
A standard approach to large network visualization is to provide an overview of the network and a detailed view of a small component of the graph centred around a focal node. The u...
Tim Dwyer, Kim Marriott, Falk Schreiber, Peter J. ...
KDD
2004
ACM
137views Data Mining» more  KDD 2004»
14 years 2 days ago
Mining scale-free networks using geodesic clustering
Many real-world graphs have been shown to be scale-free— vertex degrees follow power law distributions, vertices tend to cluster, and the average length of all shortest paths is...
Andrew Y. Wu, Michael Garland, Jiawei Han