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» SPIDER: flexible matching in databases
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AICOM
2004
118views more  AICOM 2004»
13 years 10 months ago
Qualitative pattern matching with linguistic terms
Abstract. In the framework of possibility theory, a tool named `fuzzy pattern matching' (FPM) has been proposed in the eighties and since successfully used in flexible queryin...
Yannick Loiseau, Henri Prade, Mohand Boughanem
BMCBI
2011
13 years 5 months ago
AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
Background: Cross-platform analysis of gene express data requires multiple, intricate processes at different layers with various platforms. However, existing tools handle only a s...
Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston ...
BMCBI
2008
130views more  BMCBI 2008»
13 years 10 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
BCB
2010
125views Bioinformatics» more  BCB 2010»
13 years 5 months ago
Protein structure alignment using elastic shape analysis
In this paper we present a method for flexible protein structure alignment based on elastic shape analysis of backbones, in a manner that can incorporate different characteristics...
Wei Liu, Anuj Srivastava, Jinfeng Zhang
VLDB
1994
ACM
120views Database» more  VLDB 1994»
14 years 2 months ago
Indexing Multiple Sets
Index structures for multiple sets can be classified into those that group entries according to their key values and those that group entries according to their set membership. Th...
Christoph Kilger, Guido Moerkotte