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BMCBI
2008
111views more  BMCBI 2008»
13 years 8 months ago
GENOMEPOP: A program to simulate genomes in populations
Background: There are several situations in population biology research where simulating DNA sequences is useful. Simulation of biological populations under different evolutionary...
Antonio Carvajal-Rodríguez
JCST
2006
65views more  JCST 2006»
13 years 8 months ago
P-Tree Structures and Event Horizon: Efficient Event-Set Implementations
This paper describes efficient data structures, namely the Indexed P-tree, Block P-tree, and Indexed-Block P-tree (or IP-tree, BP-tree, and IBP-tree, respectively, for short), for...
Katerina Asdre, Stavros D. Nikolopoulos
SIGMOD
2003
ACM
146views Database» more  SIGMOD 2003»
14 years 8 months ago
Estimating Compilation Time of a Query Optimizer
A query optimizer compares alternative plans in its search space to find the best plan for a given query. Depending on the search space and the enumeration algorithm, optimizers v...
Ihab F. Ilyas, Jun Rao, Guy M. Lohman, Dengfeng Ga...
IJCAI
2001
13 years 9 months ago
Making AC-3 an Optimal Algorithm
The AC-3 algorithm is a basic and widely used arc consistency enforcing algorithm in Constraint Satisfaction Problems (CSP). Its strength lies in that it is simple, empirically ef...
Yuanlin Zhang, Roland H. C. Yap
WSC
2008
13 years 10 months ago
Multi-resolution spatial simulation for molecular crowding
Spatial phenomena attract increasingly interest in computational biology. Molecular crowding, i.e. a dense population of macromolecules, is known to have a significant impact on t...
Matthias Jeschke, Adelinde M. Uhrmacher