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» Scalability analysis of embarassingly parallel applications ...
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2009
ACM
14 years 2 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
IPPS
2008
IEEE
14 years 2 months ago
Early experience with out-of-core applications on the Cray XMT
This paper describes our early experiences with a preproduction Cray XMT system that implements a scalable shared memory architecture with hardware support for multithreading. Unl...
Daniel G. Chavarría-Miranda, Andrès ...
WAN
1998
Springer
13 years 11 months ago
Performance Analysis of Wavefront Algorithms on Very-Large Scale Distributed Systems
We present a model for the parallel performance of algorithms that consist of concurrent, two-dimensional wavefronts implemented in a message passing environment. The model combine...
Adolfy Hoisie, Olaf M. Lubeck, Harvey J. Wasserman
ICDCS
2007
IEEE
14 years 1 months ago
Magellan: Charting Large-Scale Peer-to-Peer Live Streaming Topologies
Live peer-to-peer (P2P) streaming applications have been successfully deployed in the Internet. With relatively simple peer selection protocol design, modern live P2P streaming ap...
Chuan Wu, Baochun Li, Shuqiao Zhao
HIPC
2009
Springer
13 years 5 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...