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» Scalability analysis of parallel GMRES implementations
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JPDC
2011
137views more  JPDC 2011»
12 years 12 months ago
Transparent runtime parallelization of the R scripting language
Scripting languages such as R and Matlab are widely used in scientific data processing. As the data volume and the complexity of analysis tasks both grow, sequential data process...
Jiangtian Li, Xiaosong Ma, Srikanth B. Yoginath, G...
BMCBI
2005
246views more  BMCBI 2005»
13 years 9 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
VLSISP
2010
119views more  VLSISP 2010»
13 years 3 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton
EDBT
2011
ACM
256views Database» more  EDBT 2011»
13 years 16 days ago
RanKloud: a scalable ranked query processing framework on hadoop
The popularity of batch-oriented cluster architectures like Hadoop is on the rise. These batch-based systems successfully achieve high degrees of scalability by carefully allocati...
K. Selçuk Candan, Parth Nagarkar, Mithila N...
IPPS
2002
IEEE
14 years 1 months ago
Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways
Systemic pathways-oriented approaches to analysis of metabolic networks are effective for small networks but are computationally infeasible for genome scale networks. Current comp...
Nagiza F. Samatova, Al Geist, George Ostrouchov, A...