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» Scalable, updatable predictive models for sequence data
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NAR
2008
159views more  NAR 2008»
13 years 7 months ago
The UCSC Genome Browser Database: 2008 update
The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism ge...
Donna Karolchik, Robert M. Kuhn, Robert Baertsch, ...
BIBM
2008
IEEE
142views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Using Global Sequence Similarity to Enhance Biological Sequence Labeling
Identifying functionally important sites from biological sequences, formulated as a biological sequence labeling problem, has broad applications ranging from rational drug design ...
Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasa...
BMCBI
2008
112views more  BMCBI 2008»
13 years 7 months ago
A simplified approach to disulfide connectivity prediction from protein sequences
Background: Prediction of disulfide bridges from protein sequences is useful for characterizing structural and functional properties of proteins. Several methods based on differen...
Marc Vincent, Andrea Passerini, Matthieu Labb&eacu...
ICDM
2007
IEEE
131views Data Mining» more  ICDM 2007»
14 years 2 months ago
Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction
— RNA molecules are distinguished by their sequence composition and by their three-dimensional shape, called the secondary structure. The secondary structure of a pre-mRNA sequen...
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur
IROS
2007
IEEE
94views Robotics» more  IROS 2007»
14 years 2 months ago
Two-way translation of compound sentences and arm motions by recurrent neural networks
- We present a connectionist model that combines motions and language based on the behavioral experiences of a real robot. Two models of recurrent neural network with parametric bi...
Tetsuya Ogata, Masamitsu Murase, Jun Tani, Kazunor...