Abstract—This paper describes an algorithm for deriving data and computation partitions on scalable shared memory multiprocessors. The algorithm establishes affinity relationshi...
We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
While MPI is the most common mechanism for expressing parallelism, MPI programs are not composable by using current MPI process managers or parallel shells. We introduce MPISH2, an...
Parallel programming is elusive. The relative performance of di erent parallel implementations varies with machine architecture, system and problem size. How to compare di erent i...
Modern multi-core architectures have become popular because of the limitations of deep pipelines and heating and power concerns. Some of these multi-core architectures such as the...