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» Scaling Science Applications on Blue Gene
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IPPS
2006
IEEE
14 years 1 months ago
Lossless compression for large scale cluster logs
The growing computational and storage needs of several scientific applications mandate the deployment of extreme-scale parallel machines, such as IBM’s Blue Gene/L which can acc...
R. Balakrishnan, Ramendra K. Sahoo
IPPS
2008
IEEE
14 years 1 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
ICCS
2005
Springer
14 years 29 days ago
Super-Scalable Algorithms for Computing on 100, 000 Processors
In the next five years, the number of processors in high-end systems for scientific computing is expected to rise to tens and even hundreds of thousands. For example, the IBM Blu...
Christian Engelmann, Al Geist
PPOPP
2006
ACM
14 years 1 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
SC
2004
ACM
14 years 26 days ago
Scalable Line Dynamics in ParaDiS
We describe an innovative highly parallel application program, ParaDiS, which computes the plastic strength of materials by tracing the evolution of dislocation lines over time. W...
Vasily Bulatov, Wei Cai, Jeff Fier, Masato Hiratan...