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» Scaling Science Applications on Blue Gene
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PPL
2011
12 years 10 months ago
Mpi on millions of Cores
Petascale parallel computers with more than a million processing cores are expected to be available in a couple of years. Although MPI is the dominant programming interface today ...
Pavan Balaji, Darius Buntinas, David Goodell, Will...
ESCIENCE
2007
IEEE
14 years 1 months ago
Distributed and Generic Maximum Likelihood Evaluation
This paper presents GMLE 1 , a generic and distributed framework for maximum likelihood evaluation. GMLE is currently being applied to astroinformatics for determining the shape o...
Travis J. Desell, Nathan Cole, Malik Magdon-Ismail...
IPPS
2006
IEEE
14 years 1 months ago
Conjugate gradient sparse solvers: performance-power characteristics
We characterize the performance and power attributes of the conjugate gradient (CG) sparse solver which is widely used in scientific applications. We use cycle-accurate simulatio...
Konrad Malkowski, Ingyu Lee, Padma Raghavan, Mary ...
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
14 years 7 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...
BICOB
2009
Springer
14 years 2 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...