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HPCC
2007
Springer
14 years 3 months ago
Adaptive Computation of Self Sorting In-Place FFTs on Hierarchical Memory Architectures
Computing ”in-place and in-order”FFT poses a very difficult problem on hierarchical memory architectures where data movement can seriously degrade the performance. In this pape...
Ayaz Ali, S. Lennart Johnsson, Jaspal Subhlok
BMCBI
2008
125views more  BMCBI 2008»
13 years 9 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
IPPS
2002
IEEE
14 years 2 months ago
Communication Characteristics of Large-Scale Scientific Applications for Contemporary Cluster Architectures
This paper examines the explicit communication characteristics of several sophisticated scientific applications, which, by themselves, constitute a representative suite of publicl...
Jeffrey S. Vetter, Frank Mueller
IPPS
2007
IEEE
14 years 3 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
SEMWEB
2007
Springer
14 years 3 months ago
YARS2: A Federated Repository for Querying Graph Structured Data from the Web
We present the architecture of an end-to-end semantic search engine that uses a graph data model to enable interactive query answering over structured and interlinked data collecte...
Andreas Harth, Jürgen Umbrich, Aidan Hogan, S...