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CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Using Parallel Algorithms for Searching Molecular Sequence Databases
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity ...
Carla Correa Tavares dos Reis, Rubem P. Mondaini
IPPS
2003
IEEE
14 years 2 months ago
Parallel Detection of Regulatory Elements with gMP
The detection of regulatory elements from a large set of regulatory regions is a challenging problem in computational genomics. However, computational methods to extract this biol...
Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Sant...
ICFP
2012
ACM
12 years 1 days ago
Nested data-parallelism on the gpu
Graphics processing units (GPUs) provide both memory bandwidth and arithmetic performance far greater than that available on CPUs but, because of their Single-Instruction-Multiple...
Lars Bergstrom, John H. Reppy
PVM
2001
Springer
14 years 2 months ago
Review of Performance Analysis Tools for MPI Parallel Programs
In order to produce MPI applications that perform well on today’s parallel architectures, programmers need effective tools for collecting and analyzing performance data. Because ...
Shirley Moore, David Cronk, Kevin S. London, Jack ...
ICCD
2004
IEEE
106views Hardware» more  ICCD 2004»
14 years 6 months ago
Extending the Applicability of Parallel-Serial Scan Designs
Although scan-based designs are widely used in order to reduce the complexity of test generation, test application time and test data volume are substantially increased. We propos...
Baris Arslan, Ozgur Sinanoglu, Alex Orailoglu