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BMCBI
2010
143views more  BMCBI 2010»
13 years 7 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
ICML
2010
IEEE
13 years 8 months ago
Random Spanning Trees and the Prediction of Weighted Graphs
We show that the mistake bound for predicting the nodes of an arbitrary weighted graph is characterized (up to logarithmic factors) by the cutsize of a random spanning tree of the...
Nicolò Cesa-Bianchi, Claudio Gentile, Fabio...
BMCBI
2011
13 years 2 months ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
CORR
1998
Springer
145views Education» more  CORR 1998»
13 years 7 months ago
Anchoring a Lexicalized Tree-Adjoining Grammar for Discourse
We here explore a "fully" lexicalized Tree-Adjoining Grammar for discourse that takes the basic elements of a (monologic) discourse to be not simply clauses, but larger ...
Bonnie L. Webber, Aravind K. Joshi
CGF
2008
110views more  CGF 2008»
13 years 7 months ago
TimeRadarTrees: Visualizing Dynamic Compound Digraphs
The evolution of dependencies in information hierarchies can be modeled by sequences of compound digraphs with edge weights. In this paper we present a novel approach to visualize...
Michael Burch, Stephan Diehl