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» Scoring functions and enrichment: a case study on Hsp90
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BMCBI
2005
246views more  BMCBI 2005»
13 years 7 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Testing for mean and correlation changes in microarray experiments: an application for pathway analysis
Background: Microarray experiments examine the change in transcript levels of tens of thousands of genes simultaneously. To derive meaningful data, biologists investigate the resp...
Mayer Alvo, Zhongzhu Liu, Andrew Williams, Carole ...
BMCBI
2010
164views more  BMCBI 2010»
13 years 7 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
COLT
2008
Springer
13 years 9 months ago
An Information Theoretic Framework for Multi-view Learning
In the multi-view learning paradigm, the input variable is partitioned into two different views X1 and X2 and there is a target variable Y of interest. The underlying assumption i...
Karthik Sridharan, Sham M. Kakade
KDD
2004
ACM
179views Data Mining» more  KDD 2004»
14 years 8 months ago
1-dimensional splines as building blocks for improving accuracy of risk outcomes models
Transformation of both the response variable and the predictors is commonly used in fitting regression models. However, these transformation methods do not always provide the maxi...
David S. Vogel, Morgan C. Wang