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» Scoring functions and enrichment: a case study on Hsp90
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TREC
2007
13 years 8 months ago
UIC at TREC 2007 Blog Track
In TREC 2007 Blog Track, we developed a three-step algorithm for the opinion retrieval task. An information retrieval step retrieves the query-relevant documents. A following opin...
Wei Zhang, Clement T. Yu
CSB
2004
IEEE
164views Bioinformatics» more  CSB 2004»
13 years 11 months ago
Biclustering in Gene Expression Data by Tendency
The advent of DNA microarray technologies has revolutionized the experimental study of gene expression. Clustering is the most popular approach of analyzing gene expression data a...
Jinze Liu, Jiong Yang, Wei Wang 0010
BMCBI
2005
97views more  BMCBI 2005»
13 years 7 months ago
Comparative mapping of sequence-based and structure-based protein domains
Background: Protein domains have long been an ill-defined concept in biology. They are generally described as autonomous folding units with evolutionary and functional independenc...
Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, S...
ICSE
2008
IEEE-ACM
14 years 7 months ago
Proposing SQL statement coverage metrics
An increasing number of cyber attacks are occurring at the application layer when attackers use malicious input. These input validation vulnerabilities can be exploited by (among ...
Ben H. Smith, Yonghee Shin, Laurie Williams
BMCBI
2008
140views more  BMCBI 2008»
13 years 7 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh