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» Searching Protein 3-D Structures in Linear Time
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FPL
2004
Springer
109views Hardware» more  FPL 2004»
14 years 29 days ago
Hardware Accelerated Novel Protein Identification
The proteins in living organisms perform almost every significant function that governs life. A protein's functionality depends upon its physical structure, which depends on i...
Anish Alex, Jonathan Rose, Ruth Isserlin-Weinberge...
AMDO
2010
Springer
13 years 5 months ago
Finding Optimal Parameter Configuration for a Dynamic Triangle Mesh Compressor
This paper proposes a method of rate-distortion optimisation of an algorithm for compressing dynamic 3D triangle meshes. Although many articles regarding compression methods for th...
Oldrich Petrík, Libor Vása
SODA
2008
ACM
150views Algorithms» more  SODA 2008»
13 years 9 months ago
Finding an optimal tree searching strategy in linear time
We address the extension of the binary search technique from sorted arrays and totally ordered sets to trees and tree-like partially ordered sets. As in the sorted array case, the...
Shay Mozes, Krzysztof Onak, Oren Weimann
BMCBI
2005
117views more  BMCBI 2005»
13 years 7 months ago
Graph-representation of oxidative folding pathways
Background: The process of oxidative folding combines the formation of native disulfide bond with conformational folding resulting in the native three-dimensional fold. Oxidative ...
Vilmos Ágoston, Masa Cemazar, Lászl&...
GCB
2004
Springer
91views Biometrics» more  GCB 2004»
14 years 29 days ago
A Method for Fast Approximate Searching of Polypeptide Structures in the PDB
: The main contribution of this paper is a novel approach for fast searching in huge structural databases like the PDB. The data structure is based on an adaption of the generalize...
Hanjo Täubig, Arno Buchner, Jan Griebsch