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1995
ACM
14 years 2 months ago
Parallelizing the Phylogeny Problem
The problem of determining the evolutionary history of species in the form of phylogenetic trees is known as the phylogeny problem. We present a parallelization of the character c...
Jeff A. Jones, Katherine A. Yelick
BMCBI
2005
119views more  BMCBI 2005»
13 years 10 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
PLDI
2003
ACM
14 years 4 months ago
Meta optimization: improving compiler heuristics with machine learning
Compiler writers have crafted many heuristics over the years to approximately solve NP-hard problems efficiently. Finding a heuristic that performs well on a broad range of applic...
Mark Stephenson, Saman P. Amarasinghe, Martin C. M...
PRIB
2009
Springer
120views Bioinformatics» more  PRIB 2009»
14 years 5 months ago
Knowledge-Guided Docking of WW Domain Proteins and Flexible Ligands
Studies of interactions between protein domains and ligands are important in many aspects such as cellular signaling. We present a knowledge-guided approach for docking protein dom...
Haiyun Lu, Hao Li, Shamima Banu Bte Sm Rashid, Wee...
CVPR
2009
IEEE
1626views Computer Vision» more  CVPR 2009»
15 years 5 months ago
Coded Exposure Deblurring: Optimized Codes for PSF Estimation and Invertibility
We consider the problem of single image object motion deblurring from a static camera. It is well known that deblurring of moving objects using a traditional camera is ill-posed, d...
Amit K. Agrawal, Yi Xu