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» Segmentations with Rearrangements
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SDM
2007
SIAM
109views Data Mining» more  SDM 2007»
13 years 10 months ago
Segmentations with Rearrangements
Sequence segmentation is a central problem in the analysis of sequential and time-series data. In this paper we introduce and we study a novel variation to the segmentation proble...
Aristides Gionis, Evimaria Terzi
FSTTCS
2003
Springer
14 years 2 months ago
Comparing Sequences with Segment Rearrangements
Computational genomics involves comparing sequences based on “similarity” for detecting evolutionary and functional relationships. Until very recently, available portions of th...
Funda Ergün, S. Muthukrishnan, Süleyman ...
BMCBI
2008
135views more  BMCBI 2008»
13 years 9 months ago
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
Background: In the adaptive immune system, variable regions of immunoglobulin (IG) are encoded by random recombination of variable (V), diversity (D), and joining (J) gene segment...
Xiaojing Wang, Di Wu, SiYuan Zheng, Jing Sun, Lin ...
ISCAS
2005
IEEE
103views Hardware» more  ISCAS 2005»
14 years 2 months ago
Segmented channel routing with pin rearrangements via satisfiability
Fei He, William N. N. Hung, Xiaoyu Song, Ming Gu, ...
RECOMB
2005
Springer
14 years 9 months ago
Stability of Rearrangement Measures in the Comparison of Genome Sequences
We present data-analytic and statistical tools for studying rates of rearrangement of whole genomes and to assess the stability of these methods with changes in the level of resol...
David Sankoff, Matthew Mazowita