This short paper explores the potential of embedding-based graph rewriting as a tool for understanding natural computing, and in particular self-assembly. The basic point of view i...
The JavaTM programming language is primarily used for platform-independent programming. Yet it also offers many productivity, maintainability and performance benefits for platfo...
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
Connections in distributed systems, such as social networks, online communities or peer-to-peer networks, form complex graphs. These graphs are of interest to scientists in field...
We consider a graph-theoretical formalization of the process of gene assembly in ciliates introduced in Ehrenfeucht et al (2003), where a gene is modeled as a signed graph. The ge...