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ECEASST
2010
13 years 7 months ago
Assemblies as Graph Processes
This short paper explores the potential of embedding-based graph rewriting as a tool for understanding natural computing, and in particular self-assembly. The basic point of view i...
Dirk Janssens
PPPJ
2006
ACM
14 years 3 months ago
The Project Maxwell assembler system
The JavaTM programming language is primarily used for platform-independent programming. Yet it also offers many productivity, maintainability and performance benefits for platfo...
Bernd Mathiske, Douglas N. Simon, Dave Ungar
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
14 years 3 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
WPES
2006
ACM
14 years 3 months ago
Private social network analysis: how to assemble pieces of a graph privately
Connections in distributed systems, such as social networks, online communities or peer-to-peer networks, form complex graphs. These graphs are of interest to scientists in field...
Keith B. Frikken, Philippe Golle
TCS
2010
13 years 8 months ago
Computing the graph-based parallel complexity of gene assembly
We consider a graph-theoretical formalization of the process of gene assembly in ciliates introduced in Ehrenfeucht et al (2003), where a gene is modeled as a signed graph. The ge...
Artiom Alhazov, Chang Li, Ion Petre