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EPEW
2008
Springer
13 years 11 months ago
Assembly Code Analysis Using Stochastic Process Algebra
Currently compilers contain a large number of optimisations which are based on a set of heuristics that are not guaranteed to be effective to improve the performance metrics. In th...
Lamia Djoudi, Leïla Kloul
DNA
2006
Springer
146views Bioinformatics» more  DNA 2006»
14 years 1 months ago
On Times to Compute Shapes in 2D Tile Self-assembly
We study the times to grow structures within the tile self-assembly model proposed by Winfree, and the possible shapes that can be achieved. Our earlier work was confined to the g...
Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boons...
DNA
2005
Springer
117views Bioinformatics» more  DNA 2005»
14 years 3 months ago
Simple Operations for Gene Assembly
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
SODA
2012
ACM
212views Algorithms» more  SODA 2012»
12 years 7 days ago
Parallelism and time in hierarchical self-assembly
We study the role that parallelism plays in time complexariants of Winfree’s abstract Tile Assembly Model (aTAM), a model of molecular algorithmic self-assembly. In the “hiera...
Ho-Lin Chen, David Doty
WABI
2009
Springer
156views Bioinformatics» more  WABI 2009»
14 years 4 months ago
Phylogenetic Comparative Assembly
Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects. Although current sequence assemblers succes...
Peter Husemann, Jens Stoye