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» Self-consistent MPI Performance Requirements
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ICSM
2007
IEEE
14 years 1 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
ICS
2011
Tsinghua U.
12 years 11 months ago
Scalable fine-grained call path tracing
Applications must scale well to make efficient use of even medium-scale parallel systems. Because scaling problems are often difficult to diagnose, there is a critical need for sc...
Nathan R. Tallent, John M. Mellor-Crummey, Michael...
ICDCS
2012
IEEE
11 years 10 months ago
Combining Partial Redundancy and Checkpointing for HPC
Today’s largest High Performance Computing (HPC) systems exceed one Petaflops (1015 floating point operations per second) and exascale systems are projected within seven years...
James Elliott, Kishor Kharbas, David Fiala, Frank ...
CCGRID
2006
IEEE
14 years 1 months ago
Scalable Approaches for Supporting MPI-IO Atomicity
Scalable atomic and parallel access to noncontiguous regions of a file is essential to exploit high performance I/O as required by large-scale applications. Parallel I/O framewor...
Peter M. Aarestad, Avery Ching, George K. Thiruvat...
CSE
2008
IEEE
13 years 9 months ago
Exploiting Intensive Multithreading for the Efficient Simulation of 3D Seismic Wave Propagation
Parallel computing is widely used for large scale threedimensional simulation of seismic wave propagation. One particularity of most of these simulations is to consider a finite c...
Fabrice Dupros, Hideo Aochi, Ariane Ducellier, Dim...