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» Semantic Mining and Analysis of Gene Expression Data
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ACAL
2007
Springer
16 years 5 days ago
An Integrated QAP-Based Approach to Visualize Patterns of Gene Expression Similarity
Abstract. This paper illustrates how the Quadratic Assignment Problem (QAP) is used as a mathematical model that helps to produce a visualization of microarray data, based on the r...
Mario Inostroza-Ponta, Alexandre Mendes, Regina Be...
BMCBI
2008
105views more  BMCBI 2008»
15 years 6 months ago
SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
Background: High throughput microarray technologies have afforded the investigation of genomes, epigenomes, and transcriptomes at unprecedented resolution. However, software packa...
Raj Chari, Bradley P. Coe, Craig Wedseltoft, Marie...
BMCBI
2004
87views more  BMCBI 2004»
15 years 5 months ago
Selection of informative clusters from hierarchical cluster tree with gene classes
Background: A common clustering method in the analysis of gene expression data has been hierarchical clustering. Usually the analysis involves selection of clusters by cutting the...
Petri Törönen
168
Voted
BMCBI
2010
208views more  BMCBI 2010»
15 years 6 months ago
Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene
Background: Image analysis is an essential component in many biological experiments that study gene expression, cell cycle progression, and protein localization. A protocol for tr...
Zafer Aydin, John I. Murray, Robert H. Waterston, ...
JDWM
2007
90views more  JDWM 2007»
15 years 5 months ago
Mining for Mutually Exclusive Items in Transaction Databases
Association rule mining is a popular task that involves the discovery of co-occurences of items in transaction databases. Several extensions of the traditional association rule mi...
George Tzanis, Christos Berberidis