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» Semantics of Biological Regulatory Networks
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SASO
2008
IEEE
14 years 1 months ago
Cells Are Plausible Targets for High-Level Spatial Languages
—High level languages greatly increase the power of a programmer at the cost of programs that consume more s than those written at a lower level of abstraction. This inefficienc...
Jacob Beal, Jonathan Bachrach
CIBCB
2007
IEEE
13 years 11 months ago
Genetic Regulatory Network Modeling Using Network Component Analysis and Fuzzy Clustering
Gene regulatory network model is the most widely used mechanism to model and predict the behavior of living organisms. Network Component Analysis (NCA) as an emerging issue for unc...
Fatemeh Bakouie, Mohammad Hassan Moradi
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
14 years 2 months ago
Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
Abstract. Computational inference of transcriptional regulatory networks remains a challenging problem, in part due to the lack of strong network models. In this paper we present e...
Xiuwei Zhang, Bernard M. E. Moret
CIBCB
2009
IEEE
13 years 8 months ago
Steady-state analysis of genetic regulatory networks modeled by nonlinear ordinary differential equations
Although Ordinary Differential Equations (ODEs) have been used to model Genetic Regulatory Networks (GRNs) in many previous works, their steady-state behaviors are not well studied...
Haixin Wang, Lijun Qian, Edward R. Dougherty
TCBB
2010
89views more  TCBB 2010»
13 years 6 months ago
Model Composition for Macromolecular Regulatory Networks
—Models of regulatory networks become more difficult to construct and understand as they grow in size and complexity. Large models are usually built up from smaller models, repre...
Ranjit Randhawa, Clifford A. Shaffer, John J. Tyso...