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» Semi-local longest common subsequences in subquadratic time
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IFIP
2004
Springer
14 years 3 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
TCBB
2010
114views more  TCBB 2010»
13 years 8 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
VLDB
2007
ACM
145views Database» more  VLDB 2007»
14 years 10 months ago
LCS-TRIM: Dynamic Programming Meets XML Indexing and Querying
In this article, we propose a new approach for querying and indexing a database of trees with specific applications to XML datasets. Our approach relies on representing both the q...
Shirish Tatikonda, Srinivasan Parthasarathy, Matth...
SIGMOD
2005
ACM
113views Database» more  SIGMOD 2005»
14 years 3 months ago
Robust and Fast Similarity Search for Moving Object Trajectories
An important consideration in similarity-based retrieval of moving object trajectories is the definition of a distance function. The existing distance functions are usually sensi...
Lei Chen 0002, M. Tamer Özsu, Vincent Oria
ICDE
2002
IEEE
143views Database» more  ICDE 2002»
14 years 11 months ago
Discovering Similar Multidimensional Trajectories
We investigate techniques for analysis and retrieval of object trajectories in a two or three dimensional space. Such kind of data usually contain a great amount of noise, that ma...
Michail Vlachos, Dimitrios Gunopulos, George Kolli...