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BMCBI
2011
13 years 5 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
DNA
2011
Springer
227views Bioinformatics» more  DNA 2011»
12 years 10 months ago
Cooperative Assembly Systems
Several molecular systems form large-scale objects. One would like to understand their assembly and how this assembly is regulated. As a first step, we investigate the phase trans...
Vincent Danos, Heinz Koeppl, John Wilson-Kanamori
LION
2007
Springer
198views Optimization» more  LION 2007»
14 years 4 months ago
Multiobjective Landscape Analysis and the Generalized Assignment Problem
The importance of tuning a search algorithm for the specific features of the target search space has been known for quite some time. However, when dealing with multiobjective prob...
Deon Garrett, Dipankar Dasgupta
GECCO
2011
Springer
240views Optimization» more  GECCO 2011»
13 years 1 months ago
Collisions are helpful for computing unique input-output sequences
Computing unique input-output sequences (UIOs) from finite state machines (FSMs) is important for conformance testing in software engineering, where evolutionary algorithms (EAs)...
Chao Qian, Yang Yu, Zhi-Hua Zhou
TACAS
2001
Springer
135views Algorithms» more  TACAS 2001»
14 years 2 months ago
Implementing a Multi-valued Symbolic Model Checker
Multi-valued logics support the explicit modeling of uncertainty and disagreement by allowing additional truth values in the logic. Such logics can be used for verification of dyn...
Marsha Chechik, Benet Devereux, Steve M. Easterbro...