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» Sequence Comparison Using a Relational Database Approach
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WIDM
2006
ACM
14 years 1 months ago
Bridging relational database history and the web: the XML approach
The preservation of digital artifacts represents an unanswered challenge for the modern information society: XML and its query languages provide an effective environment to addre...
Fusheng Wang, Xin Zhou, Carlo Zaniolo
CAISE
2006
Springer
13 years 11 months ago
VisAVis: An Approach to an Intermediate Layer between Ontologies and Relational Database Contents
This paper introduces an approach to mapping relational database contents to ontologies. The current effort is motivated by the need of including into the Semantic Web volumes of w...
Nikolaos Konstantinou, Dimitrios-Emmanuel Spanos, ...
BMCBI
2008
88views more  BMCBI 2008»
13 years 7 months ago
Large-scale identification of polymorphic microsatellites using an in silico approach
Background: Simple Sequence Repeat (SSR) or microsatellite markers are valuable for genetic research. Experimental methods to develop SSR markers are laborious, time consuming and...
Jifeng Tang, Samantha J. Baldwin, Jeanne M. E. Jac...
BMCBI
2010
101views more  BMCBI 2010»
13 years 7 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
TJS
2008
105views more  TJS 2008»
13 years 7 months ago
Using a relational database for scalable XML search
XML is a flexible and powerful tool that enables information and security sharing in heterogeneous environments. Scalable technologies are needed to effectively manage the growing...
Rebecca Cathey, Steven M. Beitzel, Eric C. Jensen,...